species:   Scscl
pid:       PID1691
parent:    Ssc-milR-167
paralog:   
locus:     NW_001820826.1:398143-398219
matures:   ['UACCGAGAGGAACAGAGGCACU', 'UGUGCUCGGUCUCAGUUGGUUUG']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820826.1:398143-398219

6 out of bounds
18 alignments
13 proper strand
13 stranded perfect matches

        *************************                    ************************
GUCCAUGUUGUGUGCUCGGUCUCAGUUGGUUUGACAGGCUCCGAAGUUGGUCCAGUACCGAGAGGAACAGAGGCACU
.........((((.(((.((.((..(((((..(((.((((....)))).)))....)))))..)).)).))))))).
-------------------------------------------------------UACCGAGAGGAACAGAGGCACU l=22 a=3 c
----------UGUGCUCGGUCUCAGUUGGUUUG-------------------------------------------- l=23 a=0 c*
-------------------------------------------------------UACCGAGAGGAACAGAGGCACU l=22 a=3 ma
----------UGUGCUCGGUCUCAGUUGGUUUG-------------------------------------------- l=23 a=0 ma*

-------UUGUGUGCUCGGUCUCAG---------------------------------------------------- l=18 a=1 
-------UUGUGUGCUCGGUCUCAGUUG------------------------------------------------- l=21 a=1 
----------UGUGCUCGGUCUCAGUUGG------------------------------------------------ l=19 a=1 
----------UGUGCUCGGUCUCAGUUGGUU---------------------------------------------- l=21 a=1 
------------UGCUCGGUCUCAGUUG------------------------------------------------- l=16 a=1 
---------------UCGGUCUCAGUUGGUUUGACAGG--------------------------------------- l=23 a=1 
---------------------UCAGUUGGUUUGACAGGCU------------------------------------- l=19 a=1 
-------------------------UUGGUUUGACAGGCUCCGAAGUUG---------------------------- l=24 a=1 
-------------------------------------------------------UACCGAGAGGAACAGAGGC--- l=19 a=1 
-------------------------------------------------------UACCGAGAGGAACAGAGGCACU l=22 a=3 (c,ma)
--------------------------------------------------------ACCGAGAGGAACAGAGGCACU l=21 a=1 

mb-01011
ax-1001011
ku-01
ss-101110101100
fn-101
